DOWNLOAD MOLSOFT ICM

To achieve your docking goals, ICM-Dock does the following: A number of crystallographic analysis tools are available including a direct link to the electron density map repository, contour the map of the whole molecule, generate crystallographic cell, neighbors and biomolecules. Superimpose Multiple Protein Structures. ICM Docking and Screening. The ICM docking module also allows for the browsing of docking solutions, binding site analysis, visualization of grid potentials, adjustment of grid potential areas, and configurable preferences for ligand size and score threshholds.

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To achieve your docking goals, ICM-Dock does the following: Download Request a Trial License. The MolSoft team used the pocketome www.

ICM Browser Pro

There are also inbuilt procedures to account for induced fit which include multiple receptor docking 4D docking and explicit receptor docking. The ICM program relies on global optimization of the entire flexible ligand in the receptor field and combines large-scale random moves of several types with gradient local minimization and a search history molaoft.

Read and display sequences and alignments, extract sequences from 3D structure, multiple coloring of the alignment, sequence and alignment annotation and connection with the 3D structure. Solves the Poisson equation for a molecule with exact positions of electric charges.

ICM Docking and Screening. The Poisson equation for a molecule of any size can be efficiently solved using the boundary element algorithm that does not depend on any grid, and uses the exact analytical molecular surface as the boundary. Principal Scientist, MolSoftsubmitted blind docking pose predictions for the Farnesoid X receptor FXR which is a drug ocm for dyslipidemia and diabetes.

ICM-Pro User Guide v.3.8

ICM-Pro has a good record in protein modeling. ICM-REBEL calculates the accurate electrostatic potential of a molecule using boundary element algorithm and generates a 3D surface skin model colored by potential.

Interactively edit moleoft chemical inside a receptor binding pocket. ICM-Pro also contains an algorithm to predict protein-protein docking interaction sites.

Molsoft L.L.C.: Download

There are procedures which will regularize or build the backbone, shake up the side-chains and loops by global energy optimization. Automated Protein Secondary Structure Assignment. ICM-VLS ranked number one in terms of predicting the ligand pose and enrichment factor number of compounds you need to test experimentally to find a hit compared to a selection of other commercially available screening algorithms.

ICM-Pro empowers a biologist or chemist by providing a high quality protein structure analysis, modeling, and docking desktop software environment.

Modify atoms and groups and see the effect of the changes on ligand binding energy and score. Calculate protein contact areas, closed cavities, surface area, display distances and angles, display fully-interactive Ramachandran plots, superimpose multiple structures If the secondary structure string is not specified, apply ICM modification of the DSSP algorithm of automatic secondary structure assignment Kabsch and Sander, based on the observed pattern of hydrogen bonds in a three dimensional structure.

Download Request a Trial License.

The ICM docking module also allows for the browsing of docking solutions, binding site analysis, visualization of grid potentials, adjustment of grid potential areas, and configurable preferences for ligand size and score threshholds.

Terms of Use Privacy Policy. Independent Evaluations ICM virtual ligand screening technology has been ranked the best virtual screening tool in comparisons reported by the Scripps Research Institute Bursulaya et alAstra Zeneca Chen et aland Wyeth Cross et al Sequence and Alignment Tools. ICM-Pro contains a well validated and successful protein-protein docking algorithm.

A number of crystallographic analysis tools are available including a direct link to the electron density map repository, contour the map of the whole molecule, generate crystallographic cell, neighbors and biomolecules. Re-dock and minimize ligand MolSoft's docking and scoring algorithm ranked first place for prediction of kolsoft pose and screening accuracy in the most recent industry-wide competition organized by OpenEye, GlaxoWellcome, and Merck.

Surfaces Display surfaces colored by binding properties and electrostatics.

Molsoft L.L.C.: ICM-Pro

Along with over 50 other participants, the Molsoft group led by Maxim Totrov Ph. Use both hardware, side-by-side, and Anaglyph stereo.

ICM-Pro performs fast and accurate docking of fully continuously flexible small molecule ligands to a protein represented by grid interaction potentials. For example, it is important to understand the full biological unit of a protein to identify if crystal-crystal contacts have influenced the structure or you may want to contour the electron density to see how much of a ligand was seen by the crystallographer in the active site.